miRBase entry: oni-mir-10578

Stem-loop oni-mir-10578


Accession
MI0034784
Description
Oreochromis niloticus oni-mir-10578 precursor miRNA


Sequence

UGCAGUGAGUCAGUCUGAAGCUgucugacuguaucagcugacagauggcucucugaagu
..(((.((((((.((((.(((((...........)))))..)))))))))).)))....

Structure
--UG   U      G    -A     ucug 
    CAG GAGUCA UCUG  AGCUg    a
    ||| |||||| ||||  |||||    c
    guc cucggu agac  ucgac    u
ugaa   u      -    ag     uaug 


Annotation confidence Not enough data
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Genome context
CM001463.1: 31197043-31197101 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oni-mir-10578
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-10578

Accession MIMAT0042846
Description Oreochromis niloticus oni-miR-10578 mature miRNA
Sequence 1 - UGCAGUGAGUCAGUCUGAAGCU - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774