miRBase entry: oni-mir-10580

Stem-loop oni-mir-10580

Accession

MI0034786

Description

Oreochromis niloticus oni-mir-10580 precursor miRNA

Sequence

CACGGAGCGAGACUGCAGAUUCUcugcuugugugccacgugcagcauucugcagcuucgcucuguauu
.((((((((((.(((((((....((((.((((...)))).))))...))))))).))))))))))...

Structure

--C          A       UUCU    u    u 
   ACGGAGCGAG CUGCAGA    cugc ugug  
   |||||||||| |||||||    |||| |||| g
   ugucucgcuu gacgucu    gacg gcac  
uua          c       -uac    u    c

Annotation confidence Not enough data

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Genome context

CM001456.1: 17861785-17861852 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10580

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10580

Accession	MIMAT0042848
Description	Oreochromis niloticus oni-miR-10580 mature miRNA
Sequence	1 - CACGGAGCGAGACUGCAGAUUCU - 23
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774