miRBase entry: oni-mir-10555

Accession

MI0034789

Description

Oreochromis niloticus oni-mir-10555 precursor miRNA

Sequence

CCUCAAGCUGCUGUUGCUCGUCUguggcgauccagaaauagcagcagcuugucug
...(((((((((((((....((((........))))..)))))))))))))....

Structure

-CCU             CUCG    ugg 
    CAAGCUGCUGUUG    UCUg   c
    |||||||||||||    ||||    
    guucgacgacgau    agac   g
gucu             --aa    cua

Annotation confidence Not enough data

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Genome context

CM001463.1: 31199030-31199084 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-10555

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042851
Description	Oreochromis niloticus oni-miR-10555 mature miRNA
Sequence	1 - CCUCAAGCUGCUGUUGCUCGUCU - 23
Evidence	experimental Illumina [1-2]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774