miRBase entry: pny-mir-183-2

Stem-loop pny-mir-183-2


Accession
MI0034794
Description
Pundamilia nyererei pny-mir-183-2 precursor miRNA


Sequence

UAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..((......))..)))))))))))))....))))))..

Structure
--      --AC     GA        ug  ag 
  UAUGGC    UGGUA  AUUCACUG  ag  c
  ||||||    |||||  ||||||||  ||   
  auaccg    accau  uaagugac  uc  u
aa      ggau     --        ua  ac 


Annotation confidence Not enough data
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Genome context
JH419257.1: 481200-481261 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-183-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-183

Accession MIMAT0042855
Description Pundamilia nyererei pny-miR-183 mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381