miRBase entry: pny-mir-183-1

Stem-loop pny-mir-183-1

Accession

MI0034795

Description

Pundamilia nyererei pny-mir-183-1 precursor miRNA

Sequence

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  auaccg    accau  uaagugac      a
aa      ggau     --        uaucac

Annotation confidence Not enough data

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Genome context

JH419375.1: 221661-221722 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-183-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-183

Accession	MIMAT0042855
Description	Pundamilia nyererei pny-miR-183 mature miRNA
Sequence	1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381