miRBase entry: pny-mir-182

Stem-loop pny-mir-182

Accession

MI0034796

Description

Pundamilia nyererei pny-mir-182 precursor miRNA

Sequence

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggugguucuagacuugccaacu
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure

-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  aaccguu   aucuug   guggcc      g
uc       cag      ---      uaggua

Annotation confidence Not enough data

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Genome context

JH419257.1: 481927-481990 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-182

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-182

Accession	MIMAT0042856
Description	Pundamilia nyererei pny-miR-182 mature miRNA
Sequence	1 - UUUGGCAAUGGUAGAACUCACA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381