miRBase entry: pny-mir-199-1

Stem-loop pny-mir-199-1

Accession

MI0034814

Description

Pundamilia nyererei pny-mir-199-1 precursor miRNA

Sequence

cccaguguucagacuaccuguucaggaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-c       u        c   ---    ga 
  ccagugu cagacuac ugu   ucag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au

Annotation confidence Not enough data

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Genome context

JH419251.1: 676095-676154 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-199-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-199

Accession	MIMAT0042866
Description	Pundamilia nyererei pny-miR-199 mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381