miRBase entry: pny-mir-30a-1

Stem-loop pny-mir-30a-1

Accession

MI0034821

Description

Pundamilia nyererei pny-mir-30a-1 precursor miRNA

Sequence

UGUAAACAUCCUUGACUGGAAGCUgguguuaguuucuggggcuuucagucggauguuugcagc
(((((((((((..(((((((((((...(.......)...))))))))))))))))))))))..

Structure

--           UU           ggu uu 
  UGUAAACAUCC  GACUGGAAGCU   g  a
  |||||||||||  |||||||||||   |  g
  acguuuguagg  cugacuuucgg   c  u
cg           --           ggu uu

Annotation confidence Not enough data

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Genome context

JH419373.1: 139634-139696 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-30a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-30a

Accession	MIMAT0042870
Description	Pundamilia nyererei pny-miR-30a mature miRNA
Sequence	1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381