miRBase entry: pny-let-7a-3

Stem-loop pny-let-7a-3

Accession

MI0034823

Description

Pundamilia nyererei pny-let-7a-3 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUuggugggugggacugcacccugcucaggugauaacuauacagucuauugccuuccc
.(((((((((((((((((((((...((((((((.......))))))))......)))))))))))))))))))))...

Structure

--U                     ---ugg        ac 
   GAGGUAGUAGGUUGUAUAGUU      uggguggg  u
   |||||||||||||||||||||      ||||||||  g
   uuccguuaucugacauaucaa      acucgucc  c
ccc                     uagugg        ca

Annotation confidence Not enough data

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Genome context

JH419252.1: 1192712-1192789 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-let-7a

Accession	MIMAT0042871
Description	Pundamilia nyererei pny-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381