miRBase entry: pny-let-7a-4

Stem-loop pny-let-7a-4

Accession

MI0034825

Description

Pundamilia nyererei pny-let-7a-4 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacacugggagauaacuauucaaccuacugucuuucc
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure

--U              U      uuagg   aua    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   uucugucauccaac uaucaa     uag   gggu  
ccu              u      -----   --a    c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH419226.1: 4359573-4359644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-let-7a

Accession	MIMAT0042871
Description	Pundamilia nyererei pny-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381