miRBase entry: pny-mir-25

Stem-loop pny-mir-25

Accession

MI0034828

Description

Pundamilia nyererei pny-mir-25 precursor miRNA

Sequence

aggcggagacuugggcaauugccgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    g     uu g     u   ----   c 
  aggc gagac  g gcaau gcc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u

Annotation confidence Not enough data

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Genome context

JH419213.1: 70365-70424 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-25

Accession	MIMAT0042872
Description	Pundamilia nyererei pny-miR-25 mature miRNA
Sequence	39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381