miRBase entry: pny-mir-222-1

Stem-loop pny-mir-222-1


Accession
MI0034830
Description
Pundamilia nyererei pny-mir-222-1 precursor miRNA


Sequence

ugcucaguagucaguguagauccuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure
--u             -     auc    gg 
   gcucaguagucag uguag   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu 


Annotation confidence Not enough data
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Genome context
JH419245.1: 1651945-1652006 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pny-mir-222-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-222

Accession MIMAT0042874
Description Pundamilia nyererei pny-miR-222 mature miRNA
Sequence 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381