miRBase entry: pny-mir-135a

Stem-loop pny-mir-135a

Accession

MI0034832

Description

Pundamilia nyererei pny-mir-135a precursor miRNA

Sequence

UAUGGCUUUUUAUUCCUAUCUGacuguacuuaugguucauauagggauggaagccaugca
((((((((((.((((((((.(((((((....)))).))).))))))))))))))))))..

Structure

--          U        C   -    a 
  UAUGGCUUUU AUUCCUAU UGa cugu c
  |||||||||| |||||||| ||| ||||  
  guaccgaagg uagggaua acu ggua u
ac          -        u   u    u

Annotation confidence Not enough data

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Genome context

JH419244.1: 885761-885820 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-135a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-135a

Accession	MIMAT0042876
Description	Pundamilia nyererei pny-miR-135a mature miRNA
Sequence	1 - UAUGGCUUUUUAUUCCUAUCUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381