miRBase entry: pny-let-7d-2

Stem-loop pny-let-7d-2

Accession

MI0034834

Description

Pundamilia nyererei pny-let-7d-2 precursor miRNA

Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaaaagccuggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((...................)).))))))))))))..))).)))...

Structure

--U   G   UU            -  gcauaaua 
   GAG UAG  GGUUGUAUGGUU uc        a
   ||| |||  |||||||||||| ||        a
   uuc auc  ccaacaugucaa ag        a
ccu   g   uu            u  agguccga

Annotation confidence Not enough data

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Genome context

JH419307.1: 647756-647825 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7d-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-let-7d

Accession	MIMAT0042877
Description	Pundamilia nyererei pny-let-7d mature miRNA
Sequence	1 - UGAGGUAGUUGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381