miRBase entry: pny-mir-125a-1

Stem-loop pny-mir-125a-1

Accession

MI0034839

Description

Pundamilia nyererei pny-mir-125a-1 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucacaggugagguccuugggaaca
((((.(((..(((((.((((((((..........)))))))))))))..)))))))...

Structure

---    U   AC     A        gaua 
   UCCC GAG  CCUUA CCUGUGau    u
   |||| |||  ||||| ||||||||     
   aggg uuc  ggagu ggacacug    g
aca    -   cu     -        gaaa

Annotation confidence Not enough data

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Genome context

JH419307.1: 643741-643799 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-125a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-125a

Accession	MIMAT0042881
Description	Pundamilia nyererei pny-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381