miRBase entry: pny-mir-214-2

Stem-loop pny-mir-214-2

Accession

MI0034842

Description

Pundamilia nyererei pny-mir-214-2 precursor miRNA

Sequence

ugccuaucuacacuugcugugcagaauauccuccaaccuguACAGCAGGCACAGACAGGCAGA
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure

--     a   aca            aauau 
  ugccu ucu   cuugcugugcag     c
  ||||| |||   ||||||||||||     c
  ACGGA AGA   GGACGACAuguc     u
AG     C   CAC            caacc

Annotation confidence Not enough data

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Genome context

JH419320.1: 891194-891256 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-214-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-214

Accession	MIMAT0042880
Description	Pundamilia nyererei pny-miR-214 mature miRNA
Sequence	42 - ACAGCAGGCACAGACAGGCAGA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381