miRBase entry: pny-mir-19b-1

Stem-loop pny-mir-19b-1

Accession

MI0034849

Description

Pundamilia nyererei pny-mir-19b-1 precursor miRNA

Sequence

uuuugcugguuugcauucagcuuuaaugguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((..((((.............)))))))))).))).))))))...

Structure

---      -   -      uu    uuuaa 
   uuuugc ugg uuugca  cagc     u
   |||||| ||| ||||||  ||||     g
   AAAACG ACC AAACGU  GUcg     g
GUC      U   U      --    uuugu

Annotation confidence Not enough data

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Genome context

JH419216.1: 2882970-2883027 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pny-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-19b

Accession	MIMAT0042887
Description	Pundamilia nyererei pny-miR-19b mature miRNA
Sequence	37 - UGUGCAAAUCCAUGCAAAACUG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381