miRBase entry: pny-mir-99b

Stem-loop pny-mir-99b

Accession

MI0034850

Description

Pundamilia nyererei pny-mir-99b precursor miRNA

Sequence

AACCCGUAGAUCCGAUCUUGUGgcgaaucugacagcacaagcucgccucugugggucuu
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      gcgaa 
   ACCCGUAGA  CGA CUUGUG     u
   |||||||||  ||| ||||||     c
   ugggugucu  gcu gaacac     u
uuc         cc   c      gacag

Annotation confidence Not enough data

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Genome context

JH419302.1: 2116766-2116824 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-99b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-99b

Accession	MIMAT0042888
Description	Pundamilia nyererei pny-miR-99b mature miRNA
Sequence	1 - AACCCGUAGAUCCGAUCUUGUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381