miRBase entry: pny-mir-221-1

Stem-loop pny-mir-221-1


Accession
MI0034851
Description
Pundamilia nyererei pny-mir-221-1 precursor miRNA


Sequence

accuggcauacaauguagauuucugugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure
---        u         auuu     u  uu 
   accuggca acaauguag    cugug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua 


Annotation confidence Not enough data
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Genome context
JH419365.1: 536172-536235 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pny-mir-221-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-221

Accession MIMAT0042889
Description Pundamilia nyererei pny-miR-221 mature miRNA
Sequence 42 - AGCUACAUUGUCUGCUGGGUUUC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381