miRBase entry: pny-mir-17-2

Accession

MI0034856

Description

Pundamilia nyererei pny-mir-17-2 precursor miRNA

Sequence

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuacugcagugaaggcacuuuc
.(((((((((.((.(((((.(((..((....))..)))))))).)).))))))))).

Structure

C         A  G     G   uu  g 
 AAAGUGCUU CA UGCAG UAg  uu u
 ||||||||| || ||||| |||  ||  
 uuucacgga gu acguc auc  aa u
c         a  g     -   uu  c

Annotation confidence Not enough data

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Genome context

JH419214.1: 5903295-5903351 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pny-mir-17-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042893
Description	Pundamilia nyererei pny-miR-17 mature miRNA
Sequence	1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381