miRBase entry: pny-let-7e-1

Stem-loop pny-let-7e-1


Accession
MI0034860
Description
Pundamilia nyererei pny-let-7e-1 precursor miRNA


Sequence

UGAGGUAGUAGAUUGAAUAGUUgugggguuuacguccuccuuuugagauaacuauacaaucuacugucuuucc
.((((((((((((((.((((((((((((........)))).......)))))))).))))))))))))))...

Structure
--U              A        -------    uuu 
   GAGGUAGUAGAUUG AUAGUUgu       gggg   a
   |||||||||||||| ||||||||       ||||    
   uucugucaucuaac uaucaaua       ccuc   c
ccu              a        gaguuuu    cug 


Annotation confidence Not enough data
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Genome context
JH419239.1: 3285435-3285507 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pny-let-7e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-let-7e

Accession MIMAT0042895
Description Pundamilia nyererei pny-let-7e mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381