miRBase entry: pny-let-7e-2

Stem-loop pny-let-7e-2

Accession

MI0034861

Description

Pundamilia nyererei pny-let-7e-2 precursor miRNA

Sequence

UGAGGUAGUAGAUUGAAUAGUUgugggguuguguaaccucuuuuuuaaauaacuauacaaucuacugucuuucc
.((((((((((((((.((((((((((((((....))))))........)))))))).))))))))))))))...

Structure

--U              A        --------      g 
   GAGGUAGUAGAUUG AUAGUUgu        gggguu u
   |||||||||||||| ||||||||        ||||||  
   uucugucaucuaac uaucaaua        cuccaa g
ccu              a        aauuuuuu      u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH419252.1: 1192948-1193021 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7e-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-let-7e

Accession	MIMAT0042895
Description	Pundamilia nyererei pny-let-7e mature miRNA
Sequence	1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381