miRBase entry: pny-mir-125b-1

Stem-loop pny-mir-125b-1

Accession

MI0034862

Description

Pundamilia nyererei pny-mir-125b-1 precursor miRNA

Sequence

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcacggguuggguucuugggagcu
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure

---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   aggg uucu ggguugggcac uguag  u
ucg    -    u           g     ug

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH419269.1: 2041223-2041284 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-125b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-125b

Accession	MIMAT0042890
Description	Pundamilia nyererei pny-miR-125b mature miRNA
Sequence	1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381