miRBase entry: pny-mir-133-1

Stem-loop pny-mir-133-1

Accession

MI0034872

Description

Pundamilia nyererei pny-mir-133-1 precursor miRNA

Sequence

gcuggucaaacggaaccaagucagguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure

-      ca  c  a      --   g ug 
 gcuggu  aa gg accaag  uca g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu

Annotation confidence Not enough data

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Genome context

JH419263.1: 436274-436332 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-133-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-133

Accession	MIMAT0042901
Description	Pundamilia nyererei pny-miR-133 mature miRNA
Sequence	39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381