miRBase entry: pny-mir-216b

Stem-loop pny-mir-216b

Accession

MI0034878

Description

Pundamilia nyererei pny-mir-216b precursor miRNA

Sequence

UAAUCUCUGCAGGCAACUGUGAuggugcuuuauuuucucacaaucaccuggagagauucug
.(((((((.((((....(((((.((..........)))))))....)))).)))))))...

Structure

--U       G    CAAC     u  ugcu 
   AAUCUCU CAGG    UGUGA gg    u
   ||||||| ||||    ||||| ||     
   uuagaga gucc    acacu cu    u
guc       g    acua     -  uuua

Annotation confidence Not enough data

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Genome context

JH419354.1: 1380899-1380959 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-216b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-216b

Accession	MIMAT0042904
Description	Pundamilia nyererei pny-miR-216b mature miRNA
Sequence	1 - UAAUCUCUGCAGGCAACUGUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381