miRBase entry: pny-mir-20a-1

Stem-loop pny-mir-20a-1

Accession

MI0034883

Description

Pundamilia nyererei pny-mir-20a-1 precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuacugcaauguaagcacuugaagu
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure

---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     uucacgaaugu acguc      cacg  
ugaag           a     aucuaa    u

Annotation confidence Not enough data

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Genome context

JH419216.1: 2882844-2882904 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pny-mir-20a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-20a

Accession	MIMAT0042908
Description	Pundamilia nyererei pny-miR-20a mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381