miRBase entry: pny-mir-16b

Stem-loop pny-mir-16b

Accession

MI0034886

Description

Pundamilia nyererei pny-mir-16b precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGAGuuaacacucuagcugaagucuccaguauugaucguacugcu
.(((((.(((..((((((((((.....((((.....).)))))))))))))...))).)))))

Structure

U     C   -UA          uuaac   - u 
 AGCAG ACG   AAUAUUGGAG     acu c a
 ||||| |||   ||||||||||     ||| | g
 ucguc ugc   uuaugaccuc     uga g c
-     a   uag          -----   a u

Annotation confidence Not enough data

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Genome context

JH419260.1: 2488360-2488422 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-16b

Accession	MIMAT0042910
Description	Pundamilia nyererei pny-miR-16b mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGAG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381