miRBase entry: pny-let-7c

Stem-loop pny-let-7c

Accession

MI0034888

Description

Pundamilia nyererei pny-let-7c precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaauuacacccugggaguuaacuguacaaccuucuagcuuucc
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ua ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   uuc auc uccaacaugucaa   uug  g  c
ccu   g   u             ---   ag gu

Annotation confidence Not enough data

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Genome context

JH419302.1: 2116493-2116559 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-let-7c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-let-7c

Accession	MIMAT0042912
Description	Pundamilia nyererei pny-let-7c mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381