miRBase entry: pny-mir-27a

Stem-loop pny-mir-27a

Accession

MI0034890

Description

Pundamilia nyererei pny-mir-27a precursor miRNA

Sequence

aggacuuagcucgcuccgugaacaguucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--a         u    cc       guu   u a 
   ggacuuagc cgcu  gugaaca   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u

Annotation confidence Not enough data

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Genome context

JH419326.1: 1516378-1516440 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-27a

Accession	MIMAT0042914
Description	Pundamilia nyererei pny-miR-27a mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCCGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381