miRBase entry: pny-mir-15a

Stem-loop pny-mir-15a

Accession

MI0034891

Description

Pundamilia nyererei pny-mir-15a precursor miRNA

Sequence

UAGCAGCACGGAAUGGUUUGUggguuauacugagaugcaggccauacugugcugccgca
..(((((((((.((((((((((..(((...)))..)))))))))).)))))))))....

Structure

--UA         A          gg   u 
    GCAGCACGG AUGGUUUGUg  uua  
    ||||||||| ||||||||||  ||| a
    cgucguguc uaccggacgu  agu  
acgc         a          ag   c

Annotation confidence Not enough data

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Genome context

JH419260.1: 2488077-2488135 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-15a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-15a

Accession	MIMAT0042915
Description	Pundamilia nyererei pny-miR-15a mature miRNA
Sequence	1 - UAGCAGCACGGAAUGGUUUGU - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381