miRBase entry: pny-mir-138-3

Stem-loop pny-mir-138-3


Accession
MI0034894
Description
Pundamilia nyererei pny-mir-138-3 precursor miRNA


Sequence

AGCUGGUGUUGUGAAUCAGGCCGccacaguccagggaccggcuacuucccaacaccaggguc
..(((((((((.(((...(((((((.(......)))..)))))..))).)))))))))....

Structure
--AG         U   UCA     --  a ag 
    CUGGUGUUG GAA   GGCCG  cc c  u
    ||||||||| |||   |||||  || |   
    gaccacaac cuu   ucggc  gg g  c
cugg         c   -ca     ca  - ac 


Annotation confidence Not enough data
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Genome context
JH419235.1: 4709358-4709419 [-]

Database links

Mature pny-miR-138

Accession MIMAT0042916
Description Pundamilia nyererei pny-miR-138 mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381