miRBase entry: pny-mir-19a-1

Stem-loop pny-mir-19a-1

Accession

MI0034896

Description

Pundamilia nyererei pny-mir-19a-1 precursor miRNA

Sequence

aguuuugcguaguugcgcugcaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure

-            --      u  aagaa 
 aguuuugcguag  uugcgc gc     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa

Annotation confidence Not enough data

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Genome context

JH419214.1: 5902688-5902744 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pny-mir-19a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-19a

Accession	MIMAT0042918
Description	Pundamilia nyererei pny-miR-19a mature miRNA
Sequence	36 - UGUGCAAAUCUAUGCAAAACUG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381