miRBase entry: pny-mir-106

Stem-loop pny-mir-106

Accession

MI0034898

Description

Pundamilia nyererei pny-mir-106 precursor miRNA

Sequence

UAAAGUGCUUACAGUGCAGGUAGugaugauaaucuggccuacugcauugugagcacuucuuuc
..(((((((((((((((((...(((((....)))..))...))))))))))))))))).....

Structure

---UA                 GUA  --   g 
     AAGUGCUUACAGUGCAG   Gu  gau a
     |||||||||||||||||   ||  |||  
     uucacgaguguuacguc   cg  cua u
cuuuc                 auc  gu   a

Annotation confidence Not enough data

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Genome context

JH419213.1: 69744-69806 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-106

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-106

Accession	MIMAT0042920
Description	Pundamilia nyererei pny-miR-106 mature miRNA
Sequence	1 - UAAAGUGCUUACAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381