miRBase entry: pny-mir-23b

Stem-loop pny-mir-23b

Accession

MI0034903

Description

Pundamilia nyererei pny-mir-23b precursor miRNA

Sequence

ggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
.(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

--g           -  c      gugac 
   gguuccuggcg ug ugauuu     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu

Annotation confidence Not enough data

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Genome context

JH419211.1: 118724-118780 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-23b

Accession	MIMAT0042924
Description	Pundamilia nyererei pny-miR-23b mature miRNA
Sequence	37 - AUCACAUUGCCAGGGAUUACC - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381