miRBase entry: pny-mir-93

Stem-loop pny-mir-93


Accession
MI0034907
Description
Pundamilia nyererei pny-mir-93 precursor miRNA


Sequence

AAAAGUGCUGUUUGUGCAGGUAGcggucauccaccuacugcaaaaccagcacuucagg
..((((((((.((.(((((.(((.((....))..)))))))).)).))))))))....

Structure
--AA        U  G     G   -c  u 
    AAGUGCUG UU UGCAG UAG  gg c
    |||||||| || ||||| |||  ||  
    uucacgac aa acguc auc  cc a
ggac        c  a     -   ca  u 


Annotation confidence Not enough data
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Genome context
JH419213.1: 69939-69996 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from pny-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-93

Accession MIMAT0042928
Description Pundamilia nyererei pny-miR-93 mature miRNA
Sequence 1 - AAAAGUGCUGUUUGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381