miRBase entry: pny-mir-338-1

Stem-loop pny-mir-338-1


Accession
MI0034924
Description
Pundamilia nyererei pny-mir-338-1 precursor miRNA


Sequence

aacaacauccuggugcugccugaguaguugucacaaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((...........))))))))))))).))).))))).

Structure
-     c   -         ccu    aguu 
 aacaa auc cuggugcug   gagu    g
 ||||| ||| |||||||||   ||||    u
 UUGUU UAG GACUACGAC   CUca    c
G     U   U         ---    aaca 


Annotation confidence Not enough data
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Genome context
JH419363.1: 1334556-1334615 [-]

Database links

Mature pny-miR-338

Accession MIMAT0042940
Description Pundamilia nyererei pny-miR-338 mature miRNA
Sequence 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381