miRBase entry: pny-mir-20b

Stem-loop pny-mir-20b

Accession

MI0034929

Description

Pundamilia nyererei pny-mir-20b precursor miRNA

Sequence

CAAAGUGCUCACAGUGCAGGUAGuaaacguucaucuacugcaguuugugcacuugggg
..((((((.((.(.(((((.(((...........)))))))).).)).))))))....

Structure

--CA      U  C G     G   uaaa 
    AAGUGC CA A UGCAG UAG    c
    |||||| || | ||||| |||    g
    uucacg gu u acguc auc    u
gggg      u  u g     -   uacu

Annotation confidence Not enough data

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Genome context

JH419206.1: 4457251-4457308 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-20b

Accession	MIMAT0042943
Description	Pundamilia nyererei pny-miR-20b mature miRNA
Sequence	1 - CAAAGUGCUCACAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381