miRBase entry: pny-mir-132-1

Stem-loop pny-mir-132-1

Accession

MI0034931

Description

Pundamilia nyererei pny-mir-132-1 precursor miRNA

Sequence

accguggcauuagauuguuacuguaguaacagcaccaguggUAACAGUCUACAGCCAUGGUC
((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).

Structure

-        au            ----  a  a 
 accguggc  uagauuguuacu    gu gu a
 ||||||||  ||||||||||||    || ||  
 UGGUACCG  AUCUGACAAUgg    ca cg c
C        AC            ugac  -  a

Annotation confidence Not enough data

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Genome context

JH419296.1: 1546322-1546383 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-132-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-132

Accession	MIMAT0042944
Description	Pundamilia nyererei pny-miR-132 mature miRNA
Sequence	42 - UAACAGUCUACAGCCAUGGUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381