miRBase entry: pny-mir-24a-4

Stem-loop pny-mir-24a-4


Accession
MI0034932
Description
Pundamilia nyererei pny-mir-24a-4 precursor miRNA


Sequence

ugccuacugagcugauaacaguuagauguuaacaagcacUGGCUCAGUUCAGCAGGAAC
..(((.(((((((((.....(((((.((((....)))))))))))))))))).)))...

Structure
-ug   a         uaaca     a    a 
   ccu cugagcuga     guuag uguu a
   ||| |||||||||     ||||| ||||  
   GGA GACUUGACU     CGGUc acga c
CAA   C         -----     -    a 


Annotation confidence Not enough data
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Genome context
JH419326.1: 1518568-1518626 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-24a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-24a-4

Accession MIMAT0042945
Description Pundamilia nyererei pny-miR-24a-4 mature miRNA
Sequence 40 - UGGCUCAGUUCAGCAGGAAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381