miRBase entry: pny-mir-212-1

Stem-loop pny-mir-212-1

Accession

MI0034934

Description

Pundamilia nyererei pny-mir-212-1 precursor miRNA

Sequence

accuuggcucuagacugcuuacugcuaaaacuccuccaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((...................))))))))))))).))))).))..

Structure

-a  u     c       c      cuaaaacu 
  cc uggcu uagacug uuacug        c
  || ||||| ||||||| ||||||        c
  GG ACUGA AUCUGAC AAUgac        u
UC  U     C       -      augaaacc

Annotation confidence Not enough data

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Genome context

JH419296.1: 1546046-1546112 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-212-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-212

Accession	MIMAT0042947
Description	Pundamilia nyererei pny-miR-212 mature miRNA
Sequence	47 - UAACAGUCUACAGUCAUGGCU - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381