miRBase entry: pny-mir-23a-1

Stem-loop pny-mir-23a-1

Accession

MI0034942

Description

Pundamilia nyererei pny-mir-23a-1 precursor miRNA

Sequence

gaauuccuggcagagugauuuuuuuuuaacuagaggacugaAUCACAUUGCCAGGGAUUUCC
(((((((((((((.(((((((.(((((.....)))))..))))))).)))))))))))))..

Structure

--             a       -u     a 
  gaauuccuggcag gugauuu  uuuuu a
  ||||||||||||| |||||||  ||||| c
  UUUAGGGACCGUU CACUAag  aggag u
CC             A       uc     a

Annotation confidence Not enough data

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Genome context

JH419264.1: 1065127-1065188 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-23a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-23a

Accession	MIMAT0042955
Description	Pundamilia nyererei pny-miR-23a mature miRNA
Sequence	42 - AUCACAUUGCCAGGGAUUUCC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381