miRBase entry: pny-mir-23a-2

Stem-loop pny-mir-23a-2

Accession

MI0034946

Description

Pundamilia nyererei pny-mir-23a-2 precursor miRNA

Sequence

ggguuccuggcaccgugauuugaugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCC
.(((((((((((..(((((((...................)))))))..)))))))))))...

Structure

--g           cc       gaugcaca 
   gguuccuggca  gugauuu        a
   |||||||||||  |||||||        a
   UUAGGGACCGU  CACUAaa        g
CCU           UA       aacaaaga

Annotation confidence Not enough data

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Genome context

JH419388.1: 1079466-1079528 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-23a

Accession	MIMAT0042955
Description	Pundamilia nyererei pny-miR-23a mature miRNA
Sequence	43 - AUCACAUUGCCAGGGAUUUCC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381