miRBase entry: pny-mir-301b-2

Stem-loop pny-mir-301b-2

Accession

MI0034947

Description

Pundamilia nyererei pny-mir-301b-2 precursor miRNA

Sequence

gcuuugacgauguugcacuacuguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure

   u       ---        acu  a   u 
gcu ugacgau   guugcacu   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c

Annotation confidence Not enough data

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Genome context

JH419372.1: 1324428-1324487 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-301b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-301b

Accession	MIMAT0042959
Description	Pundamilia nyererei pny-miR-301b mature miRNA
Sequence	38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381