miRBase entry: pny-mir-23a-3

Stem-loop pny-mir-23a-3

Accession

MI0034949

Description

Pundamilia nyererei pny-mir-23a-3 precursor miRNA

Sequence

ggauuccuggcagagugauuugguugugauauaauguaaAUCACAUUGCCAGGGAUUUCC
.((((((((((((.(((((((((((((...))))).)))))))).))))))))))))...

Structure

--g            a        -     g 
   gauuccuggcag gugauuug guugu  
   |||||||||||| |||||||| ||||| a
   UUAGGGACCGUU CACUAaau uaaua  
CCU            A        g     u

Annotation confidence Not enough data

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Genome context

JH419326.1: 1515529-1515588 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-23a

Accession	MIMAT0042955
Description	Pundamilia nyererei pny-miR-23a mature miRNA
Sequence	40 - AUCACAUUGCCAGGGAUUUCC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381