miRBase entry: pny-mir-96-2

Stem-loop pny-mir-96-2

Accession

MI0034959

Description

Pundamilia nyererei pny-mir-96-2 precursor miRNA

Sequence

UUUGGCACUAGCACAUUUUUGCUuuguuucuccucuuuugagcaaucauguguggugccaauau
.(((((((((.(((((..((((((...............))))))..))))))))))))))...

Structure

--U         G     UU      uguuuc 
   UUGGCACUA CACAU  UUGCUu      u
   ||||||||| |||||  ||||||      c
   aaccguggu gugua  aacgag      c
uau         -     cu      uuuucu

Annotation confidence Not enough data

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Genome context

JH419375.1: 221831-221894 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-96-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-96

Accession	MIMAT0042931
Description	Pundamilia nyererei pny-miR-96 mature miRNA
Sequence	1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381