miRBase entry: pny-mir-133-3

Stem-loop pny-mir-133-3


Accession
MI0034965
Description
Pundamilia nyererei pny-mir-133-3 precursor miRNA


Sequence

agcugguaaaauggaaccaaaucaccucuugaauggaUUUGGUCCCCUUCAACCAGCU
(((((((..((.((.((((((((............)))))))).)).))..)))))))

Structure
       aa  u  a        accuc 
agcuggu  aa gg accaaauc     u
|||||||  || || ||||||||      
UCGACCA  UU CC UGGUUUag     u
       AC  C  C        guaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH419326.1: 1863609-1863666 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pny-mir-133-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-133

Accession MIMAT0042901
Description Pundamilia nyererei pny-miR-133 mature miRNA
Sequence 38 - UUUGGUCCCCUUCAACCAGCU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381