miRBase entry: pny-mir-1-2

Stem-loop pny-mir-1-2

Accession

MI0034969

Description

Pundamilia nyererei pny-mir-1-2 precursor miRNA

Sequence

acauacuucuuuauguacccauaugaacauaugauagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((...............))))).))))))))))))))))..

Structure

--                ac     ugaaca 
  acauacuucuuuaugu  ccaua      u
  ||||||||||||||||  |||||      a
  UGUAUGAAGAAAUGUA  GGUau      u
UA                -A     cgauag

Annotation confidence Not enough data

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Genome context

JH419326.1: 1860082-1860143 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-1-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-1

Accession	MIMAT0042960
Description	Pundamilia nyererei pny-miR-1 mature miRNA
Sequence	41 - UGGAAUGUAAAGAAGUAUGUAU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381