miRBase entry: pny-mir-29b

Stem-loop pny-mir-29b

Accession

MI0034972

Description

Pundamilia nyererei pny-mir-29b precursor miRNA

Sequence

gcugguuucagaugguggcuuagaguauugucaucuaucUAGCACCAUUUGAAAUCAGUGU
(((((((((((((((((.((((((.........))))...)))))))))))))))))))..

Structure

--                 g  ---    gua 
  gcugguuucagauggug cu   uaga   u
  ||||||||||||||||| ||   ||||   u
  UGACUAAAGUUUACCAC GA   aucu   g
UG                 -  Ucu    acu

Annotation confidence Not enough data

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Genome context

JH419440.1: 754038-754098 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-29b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-29b

Accession	MIMAT0042969
Description	Pundamilia nyererei pny-miR-29b mature miRNA
Sequence	40 - UAGCACCAUUUGAAAUCAGUGU - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381