miRBase entry: pny-mir-731

Stem-loop pny-mir-731

Accession

MI0034976

Description

Pundamilia nyererei pny-mir-731 precursor miRNA

Sequence

AAUGACACGUUUUCUCCCGGAUUGcugugagcaggaaacgcaaccgggaauuucgugucagcc
..(((((((.....((((((.((((.((.........))))))))))))....)))))))...

Structure

-AA       UUUUC      A    u  gag 
   UGACACG     UCCCGG UUGc gu   c
   |||||||     |||||| |||| ||   a
   acugugc     agggcc aacg ca   g
ccg       -uuua      -    -  aag

Annotation confidence Not enough data

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Genome context

JH419244.1: 825947-826009 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-731

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-731

Accession	MIMAT0042972
Description	Pundamilia nyererei pny-miR-731 mature miRNA
Sequence	1 - AAUGACACGUUUUCUCCCGGAUUG - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381