miRBase entry: pny-mir-23c

Stem-loop pny-mir-23c

Accession

MI0034978

Description

Pundamilia nyererei pny-mir-23c precursor miRNA

Sequence

ugugucucuggcaagaugauuugggccacaaaguugaaAUCACAUUGCCAGAGACUACUG
.(((((((((((((..((((((.(((......))).))))))..))))))))))).))..

Structure

-u  -           ga      g   ca 
  gu gucucuggcaa  ugauuu ggc  c
  || |||||||||||  |||||| |||   
  CA CAGAGACCGUU  ACUAaa uug  a
GU  U           AC      g   aa

Annotation confidence Not enough data

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Genome context

JH419221.1: 2778030-2778089 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-23c

Accession	MIMAT0042974
Description	Pundamilia nyererei pny-miR-23c mature miRNA
Sequence	39 - AUCACAUUGCCAGAGACUACUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381